78 Commits

All Branches

Search

Author	SHA1	Message	Date
coolneng	d7725ab37e	Bump dependencies	2021-10-19 11:35:12 +02:00
coolneng	3ff3ea5594	Replace niv with flakes	2021-10-19 11:34:44 +02:00
coolneng	ed6433f063	Update trained model	2021-07-07 01:46:57 +02:00
coolneng	fda7f7ed5f	Show total training time	2021-07-07 01:19:26 +02:00
coolneng	2ea8000657	Update README	2021-07-07 01:13:35 +02:00
coolneng	3cda9d7126	Add poetry lock file	2021-07-06 20:16:44 +02:00
coolneng	02b23c7ae5	Add default.nix and docker.nix	2021-07-06 20:12:45 +02:00
coolneng	20170200aa	Add api poetry script	2021-07-06 19:52:35 +02:00
coolneng	b0503e8f1c	Rename src folder to locimend	2021-07-06 19:51:51 +02:00
coolneng	6cd9445e17	Remove batch size from the Input layer	2021-07-06 19:04:53 +02:00
coolneng	acd231e633	Update trained model	2021-07-06 19:03:02 +02:00
coolneng	5c9e2f4712	Add the async CLI execution of the inference	2021-07-06 19:01:50 +02:00
coolneng	ab4a098289	Change last layers units to the number of bases	2021-07-06 18:01:06 +02:00
coolneng	fba3c5318b	Await prediction and print it in the caller	2021-07-06 17:56:43 +02:00
coolneng	3ded0744b3	Bump nixpkgs revision	2021-07-06 07:29:29 +02:00
coolneng	403fa23106	Serve model via REST API	2021-07-06 06:21:32 +02:00
coolneng	f91abfe43d	Remove deprecated Jupyter notebook	2021-07-06 04:06:23 +02:00
coolneng	d0220ab1f0	Add AUC metric to model	2021-07-06 03:52:36 +02:00
coolneng	c24f528484	Update trained model and dataset	2021-07-06 03:37:36 +02:00
coolneng	6dd0d7e0ba	Add trained model	2021-07-06 03:07:54 +02:00
coolneng	1311b9b945	Apply isort to the project	2021-07-06 03:01:43 +02:00
coolneng	92c6b54966	Implement model inference of sequences	2021-07-06 02:59:37 +02:00
coolneng	1333a9256b	Remove logs directory	2021-07-06 02:12:42 +02:00
coolneng	eabb7f0285	Change model architecture to a MLP	2021-07-06 01:44:58 +02:00
coolneng	1a1262b0b1	Pad and mask the sequences in each batch	2021-07-05 19:55:31 +02:00
coolneng	70363a82a0	Refactor sequence preprocessing	2021-07-05 19:54:48 +02:00
coolneng	72e3de945a	Add type hints to the main module	2021-07-05 03:52:26 +02:00
coolneng	bcc4f4b4d4	Parse data and label files from CLI arguments	2021-07-05 03:49:14 +02:00
coolneng	a3780c9761	Move hyperparameters to a class	2021-07-05 03:24:54 +02:00
coolneng	e07d0dcdbf	Change Flatten layer, loss function and add Input	2021-06-26 17:52:20 +02:00
coolneng	4d67bdac30	Add poetry installation step to README	2021-06-26 04:35:59 +02:00
coolneng	1237394bb1	Perform one hot encoding on the sequences	2021-06-25 00:05:14 +02:00
coolneng	e9582d0883	Parallelize dataset transformations	2021-06-24 19:54:19 +02:00
coolneng	b2f20f2070	Revert "Remove dense Tensor transformation" ... This reverts commit 0912600fdc.	2021-06-24 17:10:07 +02:00
coolneng	c9466baa68	Align altered sequence with the reference sequence	2021-06-23 18:29:16 +02:00
coolneng	0912600fdc	Remove dense Tensor transformation	2021-06-23 18:28:09 +02:00
coolneng	1e433c123f	Remove base counts from the dataset	2021-06-16 13:02:49 +02:00
coolneng	a2ae7bbe11	Add the Jupyter notebook	2021-06-15 01:00:45 +02:00
coolneng	7a568f4f98	Create logs directory	2021-06-15 00:38:09 +02:00
coolneng	7029b64906	Refactor the casting function using a loop	2021-06-15 00:22:55 +02:00
coolneng	379303b440	Cast the parsed features to int32	2021-06-15 00:18:38 +02:00
coolneng	d2e5fd0fa3	Build model incrementally	2021-06-14 23:32:49 +02:00
coolneng	19ed847d12	Convert sequence and label to VarLenFeature	2021-06-14 19:33:42 +02:00
coolneng	c6d0d5959d	Update gitignore	2021-06-10 19:23:05 +02:00
coolneng	2c07c5975f	Add usage instructions	2021-06-10 19:22:41 +02:00
coolneng	498d93de2a	Execute the training loop in the model module	2021-06-10 13:27:55 +02:00
coolneng	3b2b6c4af9	Remove deprecated org notebook	2021-06-10 13:19:03 +02:00
coolneng	00e3389f5b	Add datasets	2021-06-10 13:18:25 +02:00
coolneng	08611de8e6	Fix Tensorflow seed assignment	2021-06-07 19:26:21 +02:00
coolneng	0ce582250d	Implement the training loop and metrics evaluation	2021-06-06 00:20:03 +02:00