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0.1.0

0.1.1

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• d7725ab37e
  
  Bump dependencies master 0.1.1 coolneng 2021-10-19 11:35:12 +0200
• 3ff3ea5594
  
  Replace niv with flakes coolneng 2021-10-19 11:34:44 +0200
• ed6433f063
  
  Update trained model 0.1.0 coolneng 2021-07-07 01:46:57 +0200
• fda7f7ed5f
  
  Show total training time coolneng 2021-07-07 01:19:26 +0200
• 2ea8000657
  
  Update README coolneng 2021-07-07 00:05:12 +0200
• 3cda9d7126
  
  Add poetry lock file coolneng 2021-07-06 20:16:44 +0200
• 02b23c7ae5
  
  Add default.nix and docker.nix coolneng 2021-07-06 20:12:45 +0200
• 20170200aa
  
  Add api poetry script coolneng 2021-07-06 19:52:35 +0200
• b0503e8f1c
  
  Rename src folder to locimend coolneng 2021-07-06 19:51:51 +0200
• 6cd9445e17
  
  Remove batch size from the Input layer coolneng 2021-07-06 19:04:53 +0200
• acd231e633
  
  Update trained model coolneng 2021-07-06 19:03:02 +0200
• 5c9e2f4712
  
  Add the async CLI execution of the inference coolneng 2021-07-06 18:56:50 +0200
• ab4a098289
  
  Change last layers units to the number of bases coolneng 2021-07-06 18:01:06 +0200
• fba3c5318b
  
  Await prediction and print it in the caller coolneng 2021-07-06 17:53:45 +0200
• 3ded0744b3
  
  Bump nixpkgs revision coolneng 2021-07-06 07:29:29 +0200
• 403fa23106
  
  Serve model via REST API coolneng 2021-07-06 06:21:32 +0200
• f91abfe43d
  
  Remove deprecated Jupyter notebook coolneng 2021-07-06 04:06:23 +0200
• d0220ab1f0
  
  Add AUC metric to model coolneng 2021-07-06 03:45:17 +0200
• c24f528484
  
  Update trained model and dataset coolneng 2021-07-06 03:37:36 +0200
• 6dd0d7e0ba
  
  Add trained model coolneng 2021-07-06 03:07:54 +0200
• 1311b9b945
  
  Apply isort to the project coolneng 2021-07-06 03:01:43 +0200
• 92c6b54966
  
  Implement model inference of sequences coolneng 2021-07-06 02:59:37 +0200
• 1333a9256b
  
  Remove logs directory coolneng 2021-07-06 02:12:42 +0200
• eabb7f0285
  
  Change model architecture to a MLP coolneng 2021-07-06 01:44:58 +0200
• 1a1262b0b1
  
  Pad and mask the sequences in each batch coolneng 2021-07-05 19:55:31 +0200
• 70363a82a0
  
  Refactor sequence preprocessing coolneng 2021-07-05 19:54:48 +0200
• 72e3de945a
  
  Add type hints to the main module coolneng 2021-07-05 03:51:53 +0200
• bcc4f4b4d4
  
  Parse data and label files from CLI arguments coolneng 2021-07-05 03:49:14 +0200
• a3780c9761
  
  Move hyperparameters to a class coolneng 2021-07-05 03:24:54 +0200
• e07d0dcdbf
  
  Change Flatten layer, loss function and add Input coolneng 2021-06-26 17:52:20 +0200
• 4d67bdac30
  
  Add poetry installation step to README coolneng 2021-06-25 19:16:23 +0200
• 1237394bb1
  
  Perform one hot encoding on the sequences coolneng 2021-06-25 00:04:01 +0200
• e9582d0883
  
  Parallelize dataset transformations coolneng 2021-06-24 19:30:46 +0200
• b2f20f2070
  
  Revert "Remove dense Tensor transformation" coolneng 2021-06-24 17:10:07 +0200
• c9466baa68
  
  Align altered sequence with the reference sequence coolneng 2021-06-23 18:28:34 +0200
• 0912600fdc
  
  Remove dense Tensor transformation coolneng 2021-06-23 18:27:19 +0200
• 1e433c123f
  
  Remove base counts from the dataset coolneng 2021-06-16 13:02:49 +0200
• a2ae7bbe11
  
  Add the Jupyter notebook coolneng 2021-06-15 01:00:14 +0200
• 7a568f4f98
  
  Create logs directory coolneng 2021-06-15 00:38:09 +0200
• 7029b64906
  
  Refactor the casting function using a loop coolneng 2021-06-15 00:22:55 +0200
• 379303b440
  
  Cast the parsed features to int32 coolneng 2021-06-15 00:18:38 +0200
• d2e5fd0fa3
  
  Build model incrementally coolneng 2021-06-14 23:32:49 +0200
• 19ed847d12
  
  Convert sequence and label to VarLenFeature coolneng 2021-06-14 19:33:42 +0200
• c6d0d5959d
  
  Update gitignore coolneng 2021-06-10 19:23:05 +0200
• 2c07c5975f
  
  Add usage instructions coolneng 2021-06-10 13:28:32 +0200
• 498d93de2a
  
  Execute the training loop in the model module coolneng 2021-06-10 13:27:55 +0200
• 3b2b6c4af9
  
  Remove deprecated org notebook coolneng 2021-06-10 13:19:03 +0200
• 00e3389f5b
  
  Add datasets coolneng 2021-06-10 13:18:25 +0200
• 08611de8e6
  
  Fix Tensorflow seed assignment coolneng 2021-06-07 19:26:21 +0200
• 0ce582250d
  
  Implement the training loop and metrics evaluation coolneng 2021-06-06 00:20:03 +0200
• 168a68b50d
  
  Update documentation about data splits coolneng 2021-06-06 00:13:37 +0200
• 8870da8543
  
  Create a validation set coolneng 2021-06-06 00:03:39 +0200
• 38903c5737
  
  Rename ref_sequence to label coolneng 2021-06-06 00:03:15 +0200
• 035162bd8d
  
  Fix position weight matrix assignment coolneng 2021-06-05 20:40:13 +0200
• 02d20d4e72
  
  Add reference sequence to each dataset instance coolneng 2021-06-05 20:34:59 +0200
• f30fc31c29
  
  Update README coolneng 2021-06-03 18:56:18 +0200
• c9de0c8320
  
  Add learning rate and l2 regularizer constants coolneng 2021-06-03 18:52:26 +0200
• ccaa8484c7
  
  Document read_dataset and process_input coolneng 2021-06-03 18:51:49 +0200
• f8c1a54be3
  
  Apply index-based encoding to the DNA sequence coolneng 2021-06-03 18:29:43 +0200
• d34e291085
  
  Generate a dataset from the TFRecords files coolneng 2021-06-01 23:06:25 +0200
• 220c0482f1
  
  Move hardcorded data to a constants module coolneng 2021-06-01 19:27:10 +0200
• 44ff69dc9e
  
  Document the preprocessing module coolneng 2021-06-01 18:46:17 +0200
• 5ac81c049f
  
  Change BASES constant to a local variable coolneng 2021-06-01 18:34:29 +0200
• ad49e598db
  
  Update gitignore coolneng 2021-06-01 18:27:16 +0200
• 16c01afbe7
  
  Create a dataset and write it to TFRecords files coolneng 2021-06-01 18:26:13 +0200
• 59aa61112e
  
  Create a basic CNN model coolneng 2021-05-31 20:02:44 +0200
• 731b76a0af
  
  Remove redundant modules coolneng 2021-05-31 20:00:43 +0200
• e957e714e6
  
  Replace tensorflow-io with biopython coolneng 2021-05-31 12:30:57 +0200
• 6201e35e99
  
  Document the data parsing function coolneng 2021-05-11 20:41:54 +0200
• 34fefed3ed
  
  Add literate programming notebook coolneng 2021-05-06 20:35:31 +0200
• eb072836a1
  
  Parse a FASTQ file into a Tensor coolneng 2021-05-06 20:34:39 +0200
• 62fcf0974d
  
  Add gitignore coolneng 2021-05-06 18:59:08 +0200
• 223bf16a8a
  
  Add Tensorflow workarounds to shell.nix coolneng 2021-05-06 00:12:24 +0200
• fba5578adc
  
  Resolve dependencies with Poetry coolneng 2021-05-05 23:54:48 +0200
• a4ba69feed
  
  Change python version to 3.8 coolneng 2021-05-05 23:54:20 +0200
• 38ea414b69
  
  Change nixpkgs channel to unstable coolneng 2021-05-05 23:53:48 +0200
• dd7386ff73
  
  Pin dependencies with niv coolneng 2021-05-04 21:17:02 +0200
• 5c30ede7d5
  
  Initial commit coolneng 2021-02-17 17:11:05 +0100