locimend

Author	SHA1	Message	Date
coolneng	c6d0d5959d	Update gitignore	2021-06-10 19:23:05 +02:00
coolneng	2c07c5975f	Add usage instructions	2021-06-10 19:22:41 +02:00
coolneng	498d93de2a	Execute the training loop in the model module	2021-06-10 13:27:55 +02:00
coolneng	3b2b6c4af9	Remove deprecated org notebook	2021-06-10 13:19:03 +02:00
coolneng	00e3389f5b	Add datasets	2021-06-10 13:18:25 +02:00
coolneng	08611de8e6	Fix Tensorflow seed assignment	2021-06-07 19:26:21 +02:00
coolneng	0ce582250d	Implement the training loop and metrics evaluation	2021-06-06 00:20:03 +02:00
coolneng	168a68b50d	Update documentation about data splits	2021-06-06 00:13:37 +02:00
coolneng	8870da8543	Create a validation set	2021-06-06 00:04:18 +02:00
coolneng	38903c5737	Rename ref_sequence to label	2021-06-06 00:03:15 +02:00
coolneng	035162bd8d	Fix position weight matrix assignment	2021-06-05 20:40:13 +02:00
coolneng	02d20d4e72	Add reference sequence to each dataset instance	2021-06-05 20:34:59 +02:00
coolneng	f30fc31c29	Update README	2021-06-04 12:18:44 +02:00
coolneng	c9de0c8320	Add learning rate and l2 regularizer constants	2021-06-03 18:52:26 +02:00
coolneng	ccaa8484c7	Document read_dataset and process_input	2021-06-03 18:51:49 +02:00
coolneng	f8c1a54be3	Apply index-based encoding to the DNA sequence	2021-06-03 18:29:43 +02:00
coolneng	d34e291085	Generate a dataset from the TFRecords files	2021-06-01 23:06:25 +02:00
coolneng	220c0482f1	Move hardcorded data to a constants module	2021-06-01 19:27:10 +02:00
coolneng	44ff69dc9e	Document the preprocessing module	2021-06-01 18:46:17 +02:00
coolneng	5ac81c049f	Change BASES constant to a local variable	2021-06-01 18:34:29 +02:00
coolneng	ad49e598db	Update gitignore	2021-06-01 18:27:16 +02:00
coolneng	16c01afbe7	Create a dataset and write it to TFRecords files	2021-06-01 18:26:13 +02:00
coolneng	59aa61112e	Create a basic CNN model	2021-05-31 20:02:44 +02:00
coolneng	731b76a0af	Remove redundant modules	2021-05-31 20:00:43 +02:00
coolneng	e957e714e6	Replace tensorflow-io with biopython	2021-05-31 12:30:57 +02:00
coolneng	6201e35e99	Document the data parsing function	2021-05-11 20:41:54 +02:00
coolneng	34fefed3ed	Add literate programming notebook	2021-05-06 20:44:22 +02:00
coolneng	eb072836a1	Parse a FASTQ file into a Tensor	2021-05-06 20:34:39 +02:00
coolneng	62fcf0974d	Add gitignore	2021-05-06 18:59:08 +02:00
coolneng	223bf16a8a	Add Tensorflow workarounds to shell.nix	2021-05-06 00:12:24 +02:00
coolneng	fba5578adc	Resolve dependencies with Poetry	2021-05-05 23:54:48 +02:00
coolneng	a4ba69feed	Change python version to 3.8	2021-05-05 23:54:20 +02:00
coolneng	38ea414b69	Change nixpkgs channel to unstable	2021-05-05 23:53:48 +02:00
coolneng	dd7386ff73	Pin dependencies with niv	2021-05-04 21:17:02 +02:00
coolneng	5c30ede7d5	Initial commit	2021-02-17 18:06:14 +01:00

35 Commits