950 B

Raw Blame History

locimend

locimend is a tool that corrects DNA sequencing errors using Deep Learning.

Technologies

Tensorflow
Biopython

Installation

This project uses Nix to ensure reproducible builds.

Install Nix (compatible with MacOS, Linux and WSL):

curl -L https://nixos.org/nix/install | sh

Clone the repository:

git clone https://git.coolneng.duckdns.org/coolneng/locimend

Change the working directory to the project:

cd locimend

Enter the nix-shell:

nix-shell

Install the dependencies via poetry:

poetry install

After running these commands, you will find yourself in a shell that contains all the needed dependencies.

Usage

The following command creates the dataset, trains the Deep Learning model and shows the accuracy:

poetry run python src/model.py