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Simplify repertoire generation

This commit is contained in:
coolneng 2021-03-10 12:34:20 +01:00
parent f4a001f821
commit 7b15df7614
Signed by: coolneng
GPG Key ID: 9893DA236405AF57
1 changed files with 3 additions and 5 deletions
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8
src/repertoire.r
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@ -2,14 +2,12 @@ library(immuneSIM)
library(Biostrings) library(Biostrings)
generate_repertoire <- function(number_of_sequences) { generate_repertoire <- function(number_of_sequences) {
b_chain <- immuneSIM( return(immuneSIM(
number_of_seqs = number_of_sequences, number_of_seqs = number_of_sequences,
species = "hs", species = "hs",
receptor = "tr", receptor = "tr",
chain = "b", chain = "b"
verbose = TRUE ))
)
return(b_chain)
} }
# TODO save also v_call and j_call # TODO save also v_call and j_call