coolneng
/
locigenesis
1
0
Fork 0
Code Issues Pull Requests Projects Releases Wiki Activity

Remove imperative installation instructions

This commit is contained in:
coolneng 2021-05-04 00:59:05 +02:00
parent 0e005735bc
commit 6440816a87
Signed by: coolneng
GPG Key ID: 9893DA236405AF57
1 changed files with 1 additions and 11 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

12
README.org
View File

@ -6,9 +6,7 @@ locigenesis is a tool that generates an immune repertoire and runs it through a
This project uses [[https://nixos.org/][Nix]] to ensure reproducible builds. This project uses [[https://nixos.org/][Nix]] to ensure reproducible builds.
*** Using Nix 1. Install Nix (compatible with MacOS, Linux and [[https://docs.microsoft.com/en-us/windows/wsl/about][WSL]]):
1. Install Nix (compatible with MacOS and Linux):
#+begin_src shell #+begin_src shell
curl -L https://nixos.org/nix/install | sh curl -L https://nixos.org/nix/install | sh
@ -33,13 +31,5 @@ nix-shell
#+end_src #+end_src
After running these commands, you will find yourself in a shell that contains all the needed dependencies. After running these commands, you will find yourself in a shell that contains all the needed dependencies.
*** Without Nix
The following dependencies need to be installed:
- R
- [[https://github.com/GreiffLab/immuneSIM/][immuneSIM]]
- [[https://github.com/tidyverse/stringr][stringr]]
- Java Development Kit (JDK)
** Usage ** Usage