Add alignment to generation script

2021-05-03 21:51:48 +02:00 · 2021-05-03 21:51:48 +02:00 · 36eb73b458
parent 81a57657fe
commit 36eb73b458
1 changed files with 1 additions and 0 deletions
--- a/generation.sh
+++ b/generation.sh
@ -18,4 +18,5 @@ prefix="curesim_"

 Rscript src/repertoire.r "$sequences" "$number_of_reads" &&
 	java -jar tools/CuReSim.jar -f "$data_directory$filename$fastq" -o "$data_directory$prefix$filename$fastq"
+Rscript src/alignment.r
 rm "$data_directory/log.txt"