From 36eb73b458656567cd2e7192bd72b6eb8e514de5 Mon Sep 17 00:00:00 2001
From: coolneng <akasroua@gmail.com>
Date: Mon, 3 May 2021 21:51:48 +0200
Subject: [PATCH] Add alignment to generation script

---
 generation.sh | 1 +
 1 file changed, 1 insertion(+)

diff --git a/generation.sh b/generation.sh
index 07f7114..ac50caa 100755
--- a/generation.sh
+++ b/generation.sh
@@ -18,4 +18,5 @@ prefix="curesim_"
 
 Rscript src/repertoire.r "$sequences" "$number_of_reads" &&
 	java -jar tools/CuReSim.jar -f "$data_directory$filename$fastq" -o "$data_directory$prefix$filename$fastq"
+Rscript src/alignment.r
 rm "$data_directory/log.txt"