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adapter-parser
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16 Commits

Author SHA1 Message Date
coolneng 7ed975c7ce
Refactor regex parenthesis removal into a function 2021-12-22 18:36:32 +01:00
coolneng fa23b1a950
Remove find_html_files function 2021-12-22 18:36:13 +01:00
coolneng e826d6f92b
Remove parenthesis from the FASTQ ID 2021-12-01 18:52:51 +01:00
coolneng 52eaee4568
Discard reports without overrepresented sequences 2021-12-01 15:50:33 +01:00
coolneng e59683b925
Correct extract_adapters type hint 2021-11-13 18:46:37 +01:00
coolneng 4f2dfc68d3
Update README 2021-11-13 18:43:33 +01:00
coolneng 776aba466c
Show mean and standard deviation of the lengths 2021-11-13 18:35:59 +01:00
coolneng a38534fcd0
Remove src folder 2021-11-13 18:05:26 +01:00
coolneng af412da081
Update README 2021-11-13 18:04:44 +01:00
coolneng 0ed071c69c
Save output as a FASTA file 2021-11-13 17:44:20 +01:00
coolneng 02a561b4f6
Add CLI argument parsing 2021-11-13 14:40:07 +01:00
coolneng d3f7677423
Correct extract_adapters type hint 2021-11-13 14:28:39 +01:00
coolneng a987e662b5
Implement HTML parsing and output to a file 2021-11-13 14:21:24 +01:00
coolneng 36c525fffd
Add gitignore 2021-11-13 12:52:17 +01:00
coolneng 3cc8265a56
Add dependencies 2021-11-13 12:50:20 +01:00
coolneng 03e91cabdd
Initial commit 2021-11-13 12:46:53 +01:00