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coolneng | 2ea8000657 |
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@ -58,7 +58,7 @@ contains all the needed dependencies.
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The following command creates the trains the Deep Learning model and shows the accuracy and AUC:
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The following command creates the trains the Deep Learning model and shows the accuracy and AUC:
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```bash
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```bash
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poetry run python src/main.py train <data file> <label file>
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poetry run python locimend/main.py train <data file> <label file>
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```
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```
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- <data file>: FASTQ file containing the sequences with errors
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- <data file>: FASTQ file containing the sequences with errors
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@ -69,7 +69,7 @@ Both files must contain the canonical and read simulated sequences in the same p
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A dataset is provided to train the model, in order to proceed execute the following command:
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A dataset is provided to train the model, in order to proceed execute the following command:
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```bash
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```bash
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poetry run python src/main.py train data/curesim-HVR.fastq data/HVR.fastq
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poetry run python locimend/main.py train data/curesim-HVR.fastq data/HVR.fastq
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```
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```
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@ -85,7 +85,7 @@ A trained model is provided, which can be used to infer the correct sequences. T
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The following command will infer the correct sequence, and print it:
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The following command will infer the correct sequence, and print it:
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```bash
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```bash
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poetry run python src/main.py infer "<DNA sequence>"
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poetry run python locimend/main.py infer "<DNA sequence>"
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```
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```
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#### REST API
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#### REST API
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