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coolneng 2ea8000657
Update README 2021-07-07 01:13:35 +02:00
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@ -58,7 +58,7 @@ contains all the needed dependencies.
The following command creates the trains the Deep Learning model and shows the accuracy and AUC: The following command creates the trains the Deep Learning model and shows the accuracy and AUC:
```bash ```bash
poetry run python src/main.py train <data file> <label file> poetry run python locimend/main.py train <data file> <label file>
``` ```
- <data file>: FASTQ file containing the sequences with errors - <data file>: FASTQ file containing the sequences with errors
@ -69,7 +69,7 @@ Both files must contain the canonical and read simulated sequences in the same p
A dataset is provided to train the model, in order to proceed execute the following command: A dataset is provided to train the model, in order to proceed execute the following command:
```bash ```bash
poetry run python src/main.py train data/curesim-HVR.fastq data/HVR.fastq poetry run python locimend/main.py train data/curesim-HVR.fastq data/HVR.fastq
``` ```
@ -85,7 +85,7 @@ A trained model is provided, which can be used to infer the correct sequences. T
The following command will infer the correct sequence, and print it: The following command will infer the correct sequence, and print it:
```bash ```bash
poetry run python src/main.py infer "<DNA sequence>" poetry run python locimend/main.py infer "<DNA sequence>"
``` ```
#### REST API #### REST API