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41
flake.lock
View File

@ -1,41 +0,0 @@
{
"nodes": {
"flake-utils": {
"locked": {
"lastModified": 1631561581,
"narHash": "sha256-3VQMV5zvxaVLvqqUrNz3iJelLw30mIVSfZmAaauM3dA=",
"owner": "numtide",
"repo": "flake-utils",
"rev": "7e5bf3925f6fbdfaf50a2a7ca0be2879c4261d19",
"type": "github"
},
"original": {
"owner": "numtide",
"repo": "flake-utils",
"type": "github"
}
},
"nixpkgs": {
"locked": {
"lastModified": 1634044603,
"narHash": "sha256-JX9/U/ci9Gw1fhWjEB3HfzDK8bAbcfQcTO6fEJmgFfo=",
"owner": "NixOS",
"repo": "nixpkgs",
"rev": "15847b4b4fc260fb400880aa3cbee65a65f252c5",
"type": "github"
},
"original": {
"id": "nixpkgs",
"type": "indirect"
}
},
"root": {
"inputs": {
"flake-utils": "flake-utils",
"nixpkgs": "nixpkgs"
}
}
},
"root": "root",
"version": 7
}

11
flake.nix
View File

@ -1,11 +0,0 @@
{
description =
"locimend is a tool that corrects DNA sequencing errors using Deep Learning";
inputs.flake-utils.url = "github:numtide/flake-utils";
outputs = { self, nixpkgs, flake-utils }:
flake-utils.lib.eachDefaultSystem (system:
let pkgs = nixpkgs.legacyPackages.${system};
in { devShell = import ./shell.nix { inherit pkgs; }; });
}

454
poetry.lock generated
View File

@ -1,6 +1,6 @@
[[package]] [[package]]
name = "absl-py" name = "absl-py"
version = "0.14.1" version = "0.12.0"
description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py." description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py."
category = "main" category = "main"
optional = false optional = false
@ -33,7 +33,7 @@ six = ">=1.6.1,<2.0"
[[package]] [[package]]
name = "biopython" name = "biopython"
version = "1.79" version = "1.78"
description = "Freely available tools for computational molecular biology." description = "Freely available tools for computational molecular biology."
category = "main" category = "main"
optional = false optional = false
@ -44,7 +44,7 @@ numpy = "*"
[[package]] [[package]]
name = "cachetools" name = "cachetools"
version = "4.2.4" version = "4.2.2"
description = "Extensible memoizing collections and decorators" description = "Extensible memoizing collections and decorators"
category = "main" category = "main"
optional = false optional = false
@ -52,34 +52,23 @@ python-versions = "~=3.5"
[[package]] [[package]]
name = "certifi" name = "certifi"
version = "2021.10.8" version = "2020.12.5"
description = "Python package for providing Mozilla's CA Bundle." description = "Python package for providing Mozilla's CA Bundle."
category = "main" category = "main"
optional = false optional = false
python-versions = "*" python-versions = "*"
[[package]] [[package]]
name = "charset-normalizer" name = "chardet"
version = "2.0.7" version = "4.0.0"
description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." description = "Universal encoding detector for Python 2 and 3"
category = "main" category = "main"
optional = false optional = false
python-versions = ">=3.5.0" python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
[package.extras]
unicode_backport = ["unicodedata2"]
[[package]]
name = "clang"
version = "5.0"
description = "libclang python bindings"
category = "main"
optional = false
python-versions = "*"
[[package]] [[package]]
name = "click" name = "click"
version = "8.0.3" version = "8.0.1"
description = "Composable command line interface toolkit" description = "Composable command line interface toolkit"
category = "main" category = "main"
optional = false optional = false
@ -98,7 +87,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
[[package]] [[package]]
name = "fastapi" name = "fastapi"
version = "0.66.1" version = "0.66.0"
description = "FastAPI framework, high performance, easy to learn, fast to code, ready for production" description = "FastAPI framework, high performance, easy to learn, fast to code, ready for production"
category = "main" category = "main"
optional = false optional = false
@ -110,9 +99,9 @@ starlette = "0.14.2"
[package.extras] [package.extras]
all = ["requests (>=2.24.0,<3.0.0)", "aiofiles (>=0.5.0,<0.6.0)", "jinja2 (>=2.11.2,<3.0.0)", "python-multipart (>=0.0.5,<0.0.6)", "itsdangerous (>=1.1.0,<2.0.0)", "pyyaml (>=5.3.1,<6.0.0)", "graphene (>=2.1.8,<3.0.0)", "ujson (>=4.0.1,<5.0.0)", "orjson (>=3.2.1,<4.0.0)", "email_validator (>=1.1.1,<2.0.0)", "uvicorn[standard] (>=0.12.0,<0.14.0)", "async_exit_stack (>=1.0.1,<2.0.0)", "async_generator (>=1.10,<2.0.0)"] all = ["requests (>=2.24.0,<3.0.0)", "aiofiles (>=0.5.0,<0.6.0)", "jinja2 (>=2.11.2,<3.0.0)", "python-multipart (>=0.0.5,<0.0.6)", "itsdangerous (>=1.1.0,<2.0.0)", "pyyaml (>=5.3.1,<6.0.0)", "graphene (>=2.1.8,<3.0.0)", "ujson (>=4.0.1,<5.0.0)", "orjson (>=3.2.1,<4.0.0)", "email_validator (>=1.1.1,<2.0.0)", "uvicorn[standard] (>=0.12.0,<0.14.0)", "async_exit_stack (>=1.0.1,<2.0.0)", "async_generator (>=1.10,<2.0.0)"]
dev = ["python-jose[cryptography] (>=3.3.0,<4.0.0)", "passlib[bcrypt] (>=1.7.2,<2.0.0)", "autoflake (>=1.3.1,<2.0.0)", "flake8 (>=3.8.3,<4.0.0)", "uvicorn[standard] (>=0.12.0,<0.14.0)", "graphene (>=2.1.8,<3.0.0)"] dev = ["python-jose[cryptography] (>=3.1.0,<4.0.0)", "passlib[bcrypt] (>=1.7.2,<2.0.0)", "autoflake (>=1.3.1,<2.0.0)", "flake8 (>=3.8.3,<4.0.0)", "uvicorn[standard] (>=0.12.0,<0.14.0)", "graphene (>=2.1.8,<3.0.0)"]
doc = ["mkdocs (>=1.1.2,<2.0.0)", "mkdocs-material (>=7.1.9,<8.0.0)", "markdown-include (>=0.6.0,<0.7.0)", "mkdocs-markdownextradata-plugin (>=0.1.7,<0.2.0)", "typer-cli (>=0.0.12,<0.0.13)", "pyyaml (>=5.3.1,<6.0.0)"] doc = ["mkdocs (>=1.1.2,<2.0.0)", "mkdocs-material (>=7.1.9,<8.0.0)", "markdown-include (>=0.6.0,<0.7.0)", "mkdocs-markdownextradata-plugin (>=0.1.7,<0.2.0)", "typer-cli (>=0.0.12,<0.0.13)", "pyyaml (>=5.3.1,<6.0.0)"]
test = ["pytest (>=6.2.4,<7.0.0)", "pytest-cov (>=2.12.0,<3.0.0)", "pytest-asyncio (>=0.14.0,<0.15.0)", "mypy (==0.812)", "flake8 (>=3.8.3,<4.0.0)", "black (==20.8b1)", "isort (>=5.0.6,<6.0.0)", "requests (>=2.24.0,<3.0.0)", "httpx (>=0.14.0,<0.15.0)", "email_validator (>=1.1.1,<2.0.0)", "sqlalchemy (>=1.3.18,<1.4.0)", "peewee (>=3.13.3,<4.0.0)", "databases[sqlite] (>=0.3.2,<0.4.0)", "orjson (>=3.2.1,<4.0.0)", "ujson (>=4.0.1,<5.0.0)", "async_exit_stack (>=1.0.1,<2.0.0)", "async_generator (>=1.10,<2.0.0)", "python-multipart (>=0.0.5,<0.0.6)", "aiofiles (>=0.5.0,<0.6.0)", "flask (>=1.1.2,<2.0.0)"] test = ["pytest (==5.4.3)", "pytest-cov (==2.10.0)", "pytest-asyncio (>=0.14.0,<0.15.0)", "mypy (==0.812)", "flake8 (>=3.8.3,<4.0.0)", "black (==20.8b1)", "isort (>=5.0.6,<6.0.0)", "requests (>=2.24.0,<3.0.0)", "httpx (>=0.14.0,<0.15.0)", "email_validator (>=1.1.1,<2.0.0)", "sqlalchemy (>=1.3.18,<1.4.0)", "peewee (>=3.13.3,<4.0.0)", "databases[sqlite] (>=0.3.2,<0.4.0)", "orjson (>=3.2.1,<4.0.0)", "ujson (>=4.0.1,<5.0.0)", "async_exit_stack (>=1.0.1,<2.0.0)", "async_generator (>=1.10,<2.0.0)", "python-multipart (>=0.0.5,<0.0.6)", "aiofiles (>=0.5.0,<0.6.0)", "flask (>=1.1.2,<2.0.0)"]
[[package]] [[package]]
name = "flatbuffers" name = "flatbuffers"
@ -124,7 +113,7 @@ python-versions = "*"
[[package]] [[package]]
name = "gast" name = "gast"
version = "0.4.0" version = "0.3.3"
description = "Python AST that abstracts the underlying Python version" description = "Python AST that abstracts the underlying Python version"
category = "main" category = "main"
optional = false optional = false
@ -132,25 +121,26 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
[[package]] [[package]]
name = "google-auth" name = "google-auth"
version = "2.3.0" version = "1.30.0"
description = "Google Authentication Library" description = "Google Authentication Library"
category = "main" category = "main"
optional = false optional = false
python-versions = ">= 3.6" python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*"
[package.dependencies] [package.dependencies]
cachetools = ">=2.0.0,<5.0" cachetools = ">=2.0.0,<5.0"
pyasn1-modules = ">=0.2.1" pyasn1-modules = ">=0.2.1"
rsa = ">=3.1.4,<5" rsa = {version = ">=3.1.4,<5", markers = "python_version >= \"3.6\""}
six = ">=1.9.0"
[package.extras] [package.extras]
aiohttp = ["aiohttp (>=3.6.2,<4.0.0dev)", "requests (>=2.20.0,<3.0.0dev)"] aiohttp = ["aiohttp (>=3.6.2,<4.0.0dev)"]
pyopenssl = ["pyopenssl (>=20.0.0)"] pyopenssl = ["pyopenssl (>=20.0.0)"]
reauth = ["pyu2f (>=0.1.5)"] reauth = ["pyu2f (>=0.1.5)"]
[[package]] [[package]]
name = "google-auth-oauthlib" name = "google-auth-oauthlib"
version = "0.4.6" version = "0.4.4"
description = "Google Authentication Library" description = "Google Authentication Library"
category = "main" category = "main"
optional = false optional = false
@ -176,7 +166,7 @@ six = "*"
[[package]] [[package]]
name = "grpcio" name = "grpcio"
version = "1.41.0" version = "1.32.0"
description = "HTTP/2-based RPC framework" description = "HTTP/2-based RPC framework"
category = "main" category = "main"
optional = false optional = false
@ -186,7 +176,7 @@ python-versions = "*"
six = ">=1.5.2" six = ">=1.5.2"
[package.extras] [package.extras]
protobuf = ["grpcio-tools (>=1.41.0)"] protobuf = ["grpcio-tools (>=1.32.0)"]
[[package]] [[package]]
name = "h11" name = "h11"
@ -198,44 +188,36 @@ python-versions = ">=3.6"
[[package]] [[package]]
name = "h5py" name = "h5py"
version = "3.1.0" version = "2.10.0"
description = "Read and write HDF5 files from Python" description = "Read and write HDF5 files from Python"
category = "main" category = "main"
optional = false optional = false
python-versions = ">=3.6" python-versions = "*"
[package.dependencies] [package.dependencies]
numpy = {version = ">=1.19.3", markers = "python_version >= \"3.9\""} numpy = ">=1.7"
six = "*"
[[package]] [[package]]
name = "idna" name = "idna"
version = "3.3" version = "2.10"
description = "Internationalized Domain Names in Applications (IDNA)" description = "Internationalized Domain Names in Applications (IDNA)"
category = "main" category = "main"
optional = false optional = false
python-versions = ">=3.5" python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
[[package]] [[package]]
name = "isort" name = "isort"
version = "5.9.3" version = "5.8.0"
description = "A Python utility / library to sort Python imports." description = "A Python utility / library to sort Python imports."
category = "dev" category = "dev"
optional = false optional = false
python-versions = ">=3.6.1,<4.0" python-versions = ">=3.6,<4.0"
[package.extras] [package.extras]
pipfile_deprecated_finder = ["pipreqs", "requirementslib"] pipfile_deprecated_finder = ["pipreqs", "requirementslib"]
requirements_deprecated_finder = ["pipreqs", "pip-api"] requirements_deprecated_finder = ["pipreqs", "pip-api"]
colors = ["colorama (>=0.4.3,<0.5.0)"] colors = ["colorama (>=0.4.3,<0.5.0)"]
plugins = ["setuptools"]
[[package]]
name = "keras"
version = "2.6.0"
description = "TensorFlow Keras."
category = "main"
optional = false
python-versions = "*"
[[package]] [[package]]
name = "keras-preprocessing" name = "keras-preprocessing"
@ -275,16 +257,16 @@ python-versions = ">=3.6"
[[package]] [[package]]
name = "oauthlib" name = "oauthlib"
version = "3.1.1" version = "3.1.0"
description = "A generic, spec-compliant, thorough implementation of the OAuth request-signing logic" description = "A generic, spec-compliant, thorough implementation of the OAuth request-signing logic"
category = "main" category = "main"
optional = false optional = false
python-versions = ">=3.6" python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
[package.extras] [package.extras]
rsa = ["cryptography (>=3.0.0,<4)"] rsa = ["cryptography"]
signals = ["blinker (>=1.4.0)"] signals = ["blinker"]
signedtoken = ["cryptography (>=3.0.0,<4)", "pyjwt (>=2.0.0,<3)"] signedtoken = ["cryptography", "pyjwt (>=1.0.0)"]
[[package]] [[package]]
name = "opt-einsum" name = "opt-einsum"
@ -303,11 +285,14 @@ tests = ["pytest", "pytest-cov", "pytest-pep8"]
[[package]] [[package]]
name = "protobuf" name = "protobuf"
version = "3.18.1" version = "3.15.8"
description = "Protocol Buffers" description = "Protocol Buffers"
category = "main" category = "main"
optional = false optional = false
python-versions = ">=3.5" python-versions = "*"
[package.dependencies]
six = ">=1.9"
[[package]] [[package]]
name = "pyasn1" name = "pyasn1"
@ -345,7 +330,7 @@ email = ["email-validator (>=1.0.3)"]
[[package]] [[package]]
name = "pyflakes" name = "pyflakes"
version = "2.4.0" version = "2.3.1"
description = "passive checker of Python programs" description = "passive checker of Python programs"
category = "dev" category = "dev"
optional = false optional = false
@ -353,21 +338,21 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
[[package]] [[package]]
name = "requests" name = "requests"
version = "2.26.0" version = "2.25.1"
description = "Python HTTP for Humans." description = "Python HTTP for Humans."
category = "main" category = "main"
optional = false optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
[package.dependencies] [package.dependencies]
certifi = ">=2017.4.17" certifi = ">=2017.4.17"
charset-normalizer = {version = ">=2.0.0,<2.1.0", markers = "python_version >= \"3\""} chardet = ">=3.0.2,<5"
idna = {version = ">=2.5,<4", markers = "python_version >= \"3\""} idna = ">=2.5,<3"
urllib3 = ">=1.21.1,<1.27" urllib3 = ">=1.21.1,<1.27"
[package.extras] [package.extras]
security = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)"]
socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"] socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"]
use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"]
[[package]] [[package]]
name = "requests-oauthlib" name = "requests-oauthlib"
@ -416,15 +401,15 @@ full = ["aiofiles", "graphene", "itsdangerous", "jinja2", "python-multipart", "p
[[package]] [[package]]
name = "tensorboard" name = "tensorboard"
version = "2.7.0" version = "2.5.0"
description = "TensorBoard lets you watch Tensors Flow" description = "TensorBoard lets you watch Tensors Flow"
category = "main" category = "main"
optional = false optional = false
python-versions = ">=3.6" python-versions = ">= 2.7, != 3.0.*, != 3.1.*"
[package.dependencies] [package.dependencies]
absl-py = ">=0.4" absl-py = ">=0.4"
google-auth = ">=1.6.3,<3" google-auth = ">=1.6.3,<2"
google-auth-oauthlib = ">=0.4.1,<0.5" google-auth-oauthlib = ">=0.4.1,<0.5"
grpcio = ">=1.24.3" grpcio = ">=1.24.3"
markdown = ">=2.6.8" markdown = ">=2.6.8"
@ -453,7 +438,7 @@ python-versions = "*"
[[package]] [[package]]
name = "tensorflow" name = "tensorflow"
version = "2.6.0" version = "2.4.1"
description = "TensorFlow is an open source machine learning framework for everyone." description = "TensorFlow is an open source machine learning framework for everyone."
category = "main" category = "main"
optional = false optional = false
@ -462,27 +447,25 @@ python-versions = "*"
[package.dependencies] [package.dependencies]
absl-py = ">=0.10,<1.0" absl-py = ">=0.10,<1.0"
astunparse = ">=1.6.3,<1.7.0" astunparse = ">=1.6.3,<1.7.0"
clang = ">=5.0,<6.0"
flatbuffers = ">=1.12.0,<1.13.0" flatbuffers = ">=1.12.0,<1.13.0"
gast = "0.4.0" gast = "0.3.3"
google-pasta = ">=0.2,<1.0" google-pasta = ">=0.2,<1.0"
grpcio = ">=1.37.0,<2.0" grpcio = ">=1.32.0,<1.33.0"
h5py = ">=3.1.0,<3.2.0" h5py = ">=2.10.0,<2.11.0"
keras = ">=2.6,<3.0"
keras-preprocessing = ">=1.1.2,<1.2.0" keras-preprocessing = ">=1.1.2,<1.2.0"
numpy = ">=1.19.2,<1.20.0" numpy = ">=1.19.2,<1.20.0"
opt-einsum = ">=3.3.0,<3.4.0" opt-einsum = ">=3.3.0,<3.4.0"
protobuf = ">=3.9.2" protobuf = ">=3.9.2"
six = ">=1.15.0,<1.16.0" six = ">=1.15.0,<1.16.0"
tensorboard = ">=2.6,<3.0" tensorboard = ">=2.4,<3.0"
tensorflow-estimator = ">=2.6,<3.0" tensorflow-estimator = ">=2.4.0,<2.5.0"
termcolor = ">=1.1.0,<1.2.0" termcolor = ">=1.1.0,<1.2.0"
typing-extensions = ">=3.7.4,<3.8.0" typing-extensions = ">=3.7.4,<3.8.0"
wrapt = ">=1.12.1,<1.13.0" wrapt = ">=1.12.1,<1.13.0"
[[package]] [[package]]
name = "tensorflow-estimator" name = "tensorflow-estimator"
version = "2.6.0" version = "2.4.0"
description = "TensorFlow Estimator." description = "TensorFlow Estimator."
category = "main" category = "main"
optional = false optional = false
@ -506,16 +489,16 @@ python-versions = "*"
[[package]] [[package]]
name = "urllib3" name = "urllib3"
version = "1.26.7" version = "1.26.4"
description = "HTTP library with thread-safe connection pooling, file post, and more." description = "HTTP library with thread-safe connection pooling, file post, and more."
category = "main" category = "main"
optional = false optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4" python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4"
[package.extras] [package.extras]
brotli = ["brotlipy (>=0.6.0)"]
secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "ipaddress"] secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "ipaddress"]
socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"] socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
brotli = ["brotlipy (>=0.6.0)"]
[[package]] [[package]]
name = "uvicorn" name = "uvicorn"
@ -535,13 +518,14 @@ standard = ["websockets (>=9.1)", "httptools (>=0.2.0,<0.3.0)", "watchgod (>=0.6
[[package]] [[package]]
name = "werkzeug" name = "werkzeug"
version = "2.0.2" version = "1.0.1"
description = "The comprehensive WSGI web application library." description = "The comprehensive WSGI web application library."
category = "main" category = "main"
optional = false optional = false
python-versions = ">=3.6" python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
[package.extras] [package.extras]
dev = ["pytest", "pytest-timeout", "coverage", "tox", "sphinx", "pallets-sphinx-themes", "sphinx-issues"]
watchdog = ["watchdog"] watchdog = ["watchdog"]
[[package]] [[package]]
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{file = "starlette-0.14.2.tar.gz", hash = "sha256:7d49f4a27f8742262ef1470608c59ddbc66baf37c148e938c7038e6bc7a998aa"}, {file = "starlette-0.14.2.tar.gz", hash = "sha256:7d49f4a27f8742262ef1470608c59ddbc66baf37c148e938c7038e6bc7a998aa"},
] ]
tensorboard = [ tensorboard = [
{file = "tensorboard-2.7.0-py3-none-any.whl", hash = "sha256:239f78a4a8dff200ce585a030c787773a8c1184d5c159252f5f85bac4e3c3b38"}, {file = "tensorboard-2.5.0-py3-none-any.whl", hash = "sha256:e167460085b6528956b33bab1c970c989cdce47a6616273880733f5e7bde452e"},
] ]
tensorboard-data-server = [ tensorboard-data-server = [
{file = "tensorboard_data_server-0.6.1-py3-none-any.whl", hash = "sha256:809fe9887682d35c1f7d1f54f0f40f98bb1f771b14265b453ca051e2ce58fca7"}, {file = "tensorboard_data_server-0.6.1-py3-none-any.whl", hash = "sha256:809fe9887682d35c1f7d1f54f0f40f98bb1f771b14265b453ca051e2ce58fca7"},
@ -888,21 +875,18 @@ tensorboard-plugin-wit = [
{file = "tensorboard_plugin_wit-1.8.0-py3-none-any.whl", hash = "sha256:2a80d1c551d741e99b2f197bb915d8a133e24adb8da1732b840041860f91183a"}, {file = "tensorboard_plugin_wit-1.8.0-py3-none-any.whl", hash = "sha256:2a80d1c551d741e99b2f197bb915d8a133e24adb8da1732b840041860f91183a"},
] ]
tensorflow = [ tensorflow = [
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{file = "tensorflow-2.6.0-cp36-cp36m-manylinux2010_x86_64.whl", hash = "sha256:8b5ce09ede0fe45ef100f4dc65cf3f46722194e75139f85d524058315e2ce9fa"}, {file = "tensorflow-2.4.1-cp36-cp36m-manylinux2010_x86_64.whl", hash = "sha256:55368ba0bedb513ba0e36a2543a588b5276e9b2ca99fa3232a9a176601a7bab5"},
{file = "tensorflow-2.6.0-cp36-cp36m-win_amd64.whl", hash = "sha256:dea97f664246e185d79cbe40a86309527affd4232f06afa8a6500c4fc4b64a03"}, {file = "tensorflow-2.4.1-cp36-cp36m-win_amd64.whl", hash = "sha256:0e427b1350be6dbe572f971947c5596fdbb152081f227808d8becd894bf40282"},
{file = "tensorflow-2.6.0-cp37-cp37m-macosx_10_11_x86_64.whl", hash = "sha256:4716c9b25a61a2c79b1f253d1e114f1f8679241559c13ad18c657c626a7d5924"}, {file = "tensorflow-2.4.1-cp37-cp37m-macosx_10_11_x86_64.whl", hash = "sha256:36d5acd60aac48e34bd545d0ce1fb8b3fceebff6b8782436defd0f71c12203bd"},
{file = "tensorflow-2.6.0-cp37-cp37m-manylinux2010_x86_64.whl", hash = "sha256:e45e026a9d08c89cecc1160d8248135e2fb79bdc3267328399e1fb25ce583bd6"}, {file = "tensorflow-2.4.1-cp37-cp37m-manylinux2010_x86_64.whl", hash = "sha256:22723b8e1fa83b34f56c349b16a57aaff913b404451fcf70981f2b1d6e0c64fc"},
{file = "tensorflow-2.6.0-cp37-cp37m-win_amd64.whl", hash = "sha256:6e38b6969414d16afc560c58ca34e1328cc0a5dbd644b64e060f5be8a6653274"}, {file = "tensorflow-2.4.1-cp37-cp37m-win_amd64.whl", hash = "sha256:2357112319303da1b5459a621fd0503c2b2cd97b6c33c4903abd46b3c3e380e2"},
{file = "tensorflow-2.6.0-cp38-cp38-macosx_10_11_x86_64.whl", hash = "sha256:2a067d22a356c2cd4753bdd16ee492c55a610f5ebc52713e2954c642f070321c"}, {file = "tensorflow-2.4.1-cp38-cp38-macosx_10_11_x86_64.whl", hash = "sha256:4a04081647b89a8fb602895b29ffc559e3c20aac8bde1d4c5ecd2a65adce5d35"},
{file = "tensorflow-2.6.0-cp38-cp38-manylinux2010_x86_64.whl", hash = "sha256:2c9b8c6adc060acfcf805a2ea501db0124b679d95b522fd5983a4c110e8e0264"}, {file = "tensorflow-2.4.1-cp38-cp38-manylinux2010_x86_64.whl", hash = "sha256:efa9daa4b3701a4e439b24b74c1e4b66844aee8ae5263fb3cc12281ac9cc9f67"},
{file = "tensorflow-2.6.0-cp38-cp38-win_amd64.whl", hash = "sha256:d6468e05552720100e8f94097feb770de320e4c8c244323a8746bd84e5ba4052"}, {file = "tensorflow-2.4.1-cp38-cp38-win_amd64.whl", hash = "sha256:eedcf578afde5e6e69c75d796bed41093451cd1ab54afb438760e40fb74a09de"},
{file = "tensorflow-2.6.0-cp39-cp39-macosx_10_11_x86_64.whl", hash = "sha256:00b1af0a0c5c102db19caceffac4bd4e6c536e6d7512144c241a4ace4428e7c6"},
{file = "tensorflow-2.6.0-cp39-cp39-manylinux2010_x86_64.whl", hash = "sha256:bc73ebdd30c48cfc27ba307271117e6dbb795b37396ed817b2fec9393380b115"},
{file = "tensorflow-2.6.0-cp39-cp39-win_amd64.whl", hash = "sha256:bfb255c2b0400bc5b4060dda098d46cd7ddeb53b7cbac1dfa29435612cba828c"},
] ]
tensorflow-estimator = [ tensorflow-estimator = [
{file = "tensorflow_estimator-2.6.0-py2.py3-none-any.whl", hash = "sha256:cf78528998efdb637ac0abaf525c929bf192767544eb24ae20d9266effcf5afd"}, {file = "tensorflow_estimator-2.4.0-py2.py3-none-any.whl", hash = "sha256:5b7b7bf2debe19a8794adacc43e8ba6459daa4efaf54d3302623994a359b17f0"},
] ]
termcolor = [ termcolor = [
{file = "termcolor-1.1.0.tar.gz", hash = "sha256:1d6d69ce66211143803fbc56652b41d73b4a400a2891d7bf7a1cdf4c02de613b"}, {file = "termcolor-1.1.0.tar.gz", hash = "sha256:1d6d69ce66211143803fbc56652b41d73b4a400a2891d7bf7a1cdf4c02de613b"},
@ -913,16 +897,16 @@ typing-extensions = [
{file = "typing_extensions-3.7.4.3.tar.gz", hash = "sha256:99d4073b617d30288f569d3f13d2bd7548c3a7e4c8de87db09a9d29bb3a4a60c"}, {file = "typing_extensions-3.7.4.3.tar.gz", hash = "sha256:99d4073b617d30288f569d3f13d2bd7548c3a7e4c8de87db09a9d29bb3a4a60c"},
] ]
urllib3 = [ urllib3 = [
{file = "urllib3-1.26.7-py2.py3-none-any.whl", hash = "sha256:c4fdf4019605b6e5423637e01bc9fe4daef873709a7973e195ceba0a62bbc844"}, {file = "urllib3-1.26.4-py2.py3-none-any.whl", hash = "sha256:2f4da4594db7e1e110a944bb1b551fdf4e6c136ad42e4234131391e21eb5b0df"},
{file = "urllib3-1.26.7.tar.gz", hash = "sha256:4987c65554f7a2dbf30c18fd48778ef124af6fab771a377103da0585e2336ece"}, {file = "urllib3-1.26.4.tar.gz", hash = "sha256:e7b021f7241115872f92f43c6508082facffbd1c048e3c6e2bb9c2a157e28937"},
] ]
uvicorn = [ uvicorn = [
{file = "uvicorn-0.14.0-py3-none-any.whl", hash = "sha256:2a76bb359171a504b3d1c853409af3adbfa5cef374a4a59e5881945a97a93eae"}, {file = "uvicorn-0.14.0-py3-none-any.whl", hash = "sha256:2a76bb359171a504b3d1c853409af3adbfa5cef374a4a59e5881945a97a93eae"},
{file = "uvicorn-0.14.0.tar.gz", hash = "sha256:45ad7dfaaa7d55cab4cd1e85e03f27e9d60bc067ddc59db52a2b0aeca8870292"}, {file = "uvicorn-0.14.0.tar.gz", hash = "sha256:45ad7dfaaa7d55cab4cd1e85e03f27e9d60bc067ddc59db52a2b0aeca8870292"},
] ]
werkzeug = [ werkzeug = [
{file = "Werkzeug-2.0.2-py3-none-any.whl", hash = "sha256:63d3dc1cf60e7b7e35e97fa9861f7397283b75d765afcaefd993d6046899de8f"}, {file = "Werkzeug-1.0.1-py2.py3-none-any.whl", hash = "sha256:2de2a5db0baeae7b2d2664949077c2ac63fbd16d98da0ff71837f7d1dea3fd43"},
{file = "Werkzeug-2.0.2.tar.gz", hash = "sha256:aa2bb6fc8dee8d6c504c0ac1e7f5f7dc5810a9903e793b6f715a9f015bdadb9a"}, {file = "Werkzeug-1.0.1.tar.gz", hash = "sha256:6c80b1e5ad3665290ea39320b91e1be1e0d5f60652b964a3070216de83d2e47c"},
] ]
wrapt = [ wrapt = [
{file = "wrapt-1.12.1.tar.gz", hash = "sha256:b62ffa81fb85f4332a4f609cab4ac40709470da05643a082ec1eb88e6d9b97d7"}, {file = "wrapt-1.12.1.tar.gz", hash = "sha256:b62ffa81fb85f4332a4f609cab4ac40709470da05643a082ec1eb88e6d9b97d7"},

2
pyproject.toml
View File

@ -6,7 +6,7 @@ authors = ["coolneng <akasroua@gmail.com>"]
license = "GPL-3.0-or-later" license = "GPL-3.0-or-later"
[tool.poetry.dependencies] [tool.poetry.dependencies]
python = "3.9.*" python = "3.8.*"
tensorflow = "^2.4.1" tensorflow = "^2.4.1"
biopython = "^1.78" biopython = "^1.78"
fastapi = "^0.66.0" fastapi = "^0.66.0"

4
shell.nix
View File

@ -1,9 +1,9 @@
{ pkgs ? import <nixpkgs> { } }: { sources ? import ./nix/sources.nix, pkgs ? import sources.nixpkgs { } }:
with pkgs; with pkgs;
mkShell { mkShell {
buildInputs = [ python39 poetry ]; buildInputs = [ python38 poetry ];
shellHook = '' shellHook = ''
export LD_LIBRARY_PATH=${pkgs.stdenv.cc.cc.lib}/lib:$LD_LIBRARY_PATH export LD_LIBRARY_PATH=${pkgs.stdenv.cc.cc.lib}/lib:$LD_LIBRARY_PATH
unset SOURCE_DATE_EPOCH unset SOURCE_DATE_EPOCH