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coolneng | 78acc54e5f |
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@ -1,5 +1,6 @@
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from fastapi import FastAPI
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from pydantic import BaseModel
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from model import infer_sequence
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app = FastAPI()
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@ -22,7 +22,8 @@ def execute_task(args):
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if args.task == "train":
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train_model(data_file=args.data_file, label_file=args.label_file)
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else:
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infer_sequence(sequence=args.sequence)
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prediction = await infer_sequence(sequence=args.sequence)
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print(f"Error-corrected sequence: {prediction}")
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def main() -> None:
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@ -34,7 +34,7 @@ def build_model(hyperparams) -> Model:
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units=64, activation="relu", kernel_regularizer=l2(hyperparams.l2_rate)
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),
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Dropout(rate=0.3),
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Dense(units=len(BASES), activation="softmax"),
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Dense(units=32, activation="softmax"),
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]
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)
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model.compile(
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@ -71,7 +71,7 @@ def train_model(data_file, label_file, seed_value=42) -> None:
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model.save("trained_model")
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async def infer_sequence(sequence) -> None:
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async def infer_sequence(sequence) -> str:
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"""
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Predict the correct sequence, using the trained model
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"""
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@ -81,5 +81,4 @@ async def infer_sequence(sequence) -> None:
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prediction = model.predict(one_hot_encoded_sequence)
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encoded_prediction = argmax(prediction, axis=1)
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final_prediction = decode_sequence(encoded_prediction)
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print(f"Error-corrected sequence: {final_prediction}")
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return final_prediction
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