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Author SHA1 Message Date
coolneng fba3c5318b
Await prediction and print it in the caller 2021-07-06 17:56:43 +02:00
3 changed files with 5 additions and 4 deletions

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@ -1,5 +1,6 @@
from fastapi import FastAPI from fastapi import FastAPI
from pydantic import BaseModel from pydantic import BaseModel
from model import infer_sequence from model import infer_sequence
app = FastAPI() app = FastAPI()

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@ -22,7 +22,8 @@ def execute_task(args):
if args.task == "train": if args.task == "train":
train_model(data_file=args.data_file, label_file=args.label_file) train_model(data_file=args.data_file, label_file=args.label_file)
else: else:
infer_sequence(sequence=args.sequence) prediction = infer_sequence(sequence=args.sequence)
print(f"Error-corrected sequence: {prediction}")
def main() -> None: def main() -> None:

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@ -34,7 +34,7 @@ def build_model(hyperparams) -> Model:
units=64, activation="relu", kernel_regularizer=l2(hyperparams.l2_rate) units=64, activation="relu", kernel_regularizer=l2(hyperparams.l2_rate)
), ),
Dropout(rate=0.3), Dropout(rate=0.3),
Dense(units=len(BASES), activation="softmax"), Dense(units=32, activation="softmax"),
] ]
) )
model.compile( model.compile(
@ -71,7 +71,7 @@ def train_model(data_file, label_file, seed_value=42) -> None:
model.save("trained_model") model.save("trained_model")
async def infer_sequence(sequence) -> None: async def infer_sequence(sequence) -> str:
""" """
Predict the correct sequence, using the trained model Predict the correct sequence, using the trained model
""" """
@ -81,5 +81,4 @@ async def infer_sequence(sequence) -> None:
prediction = model.predict(one_hot_encoded_sequence) prediction = model.predict(one_hot_encoded_sequence)
encoded_prediction = argmax(prediction, axis=1) encoded_prediction = argmax(prediction, axis=1)
final_prediction = decode_sequence(encoded_prediction) final_prediction = decode_sequence(encoded_prediction)
print(f"Error-corrected sequence: {final_prediction}")
return final_prediction return final_prediction