diff --git a/src/model.py b/src/model.py index 9a0aef8..5b31d86 100644 --- a/src/model.py +++ b/src/model.py @@ -1,6 +1,11 @@ from tensorflow_io import genome +from tensorflow import Tensor +from typing import Tuple -def parse_data(filepath): +def parse_data(filepath) -> Tuple[Tensor, Tensor]: + """ + Reads a FASTQ file and returns the sequences and the qualities + """ HVR = genome.read_fastq(filename=filepath) return HVR.sequences, HVR.raw_quality