Change BASES constant to a local variable
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@ -1,10 +1,8 @@
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from tensorflow.keras import Model, Sequential, layers
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from tensorflow.keras.regularizers import l2
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from preprocessing import BASES
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def build_model(hyper_parameters) -> Model:
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def build_model(hyper_parameters, bases="ACGT") -> Model:
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"""
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Builds the CNN model
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"""
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@ -41,6 +39,6 @@ def build_model(hyper_parameters) -> Model:
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),
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layers.Dropout(rate=0.3),
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# Output layer with softmax activation
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layers.Dense(units=len(BASES), activation="softmax"),
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layers.Dense(units=len(bases), activation="softmax"),
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]
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)
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@ -4,8 +4,6 @@ from numpy.random import random
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from tensorflow.io import TFRecordWriter
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from tensorflow.train import BytesList, Example, Feature, Features, FloatList
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BASES = "ACGT"
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def generate_example(sequence, weight_matrix):
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schema = {
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