Replace niv with flakes

flake.lock

@@ -0,0 +1,41 @@
+{
+  "nodes": {
+    "flake-utils": {
+      "locked": {
+        "lastModified": 1631561581,
+        "narHash": "sha256-3VQMV5zvxaVLvqqUrNz3iJelLw30mIVSfZmAaauM3dA=",
+        "owner": "numtide",
+        "repo": "flake-utils",
+        "rev": "7e5bf3925f6fbdfaf50a2a7ca0be2879c4261d19",
+        "type": "github"
+      },
+      "original": {
+        "owner": "numtide",
+        "repo": "flake-utils",
+        "type": "github"
+      }
+    },
+    "nixpkgs": {
+      "locked": {
+        "lastModified": 1634044603,
+        "narHash": "sha256-JX9/U/ci9Gw1fhWjEB3HfzDK8bAbcfQcTO6fEJmgFfo=",
+        "owner": "NixOS",
+        "repo": "nixpkgs",
+        "rev": "15847b4b4fc260fb400880aa3cbee65a65f252c5",
+        "type": "github"
+      },
+      "original": {
+        "id": "nixpkgs",
+        "type": "indirect"
+      }
+    },
+    "root": {
+      "inputs": {
+        "flake-utils": "flake-utils",
+        "nixpkgs": "nixpkgs"
+      }
+    }
+  },
+  "root": "root",
+  "version": 7
+}

flake.nix

@@ -0,0 +1,11 @@
+{
+  description =
+    "locimend is a tool that corrects DNA sequencing errors using Deep Learning";
+
+  inputs.flake-utils.url = "github:numtide/flake-utils";
+
+  outputs = { self, nixpkgs, flake-utils }:
+    flake-utils.lib.eachDefaultSystem (system:
+      let pkgs = nixpkgs.legacyPackages.${system};
+      in { devShell = import ./shell.nix { inherit pkgs; }; });
+}

shell.nix

@@ -1,4 +1,4 @@
-{ sources ? import ./nix/sources.nix, pkgs ? import sources.nixpkgs { } }:
+{ pkgs ? import <nixpkgs> { } }:
 
 with pkgs;