Convert org mode README to markdown

README.md

@@ -22,25 +22,25 @@ builds.
 1.  Install Nix (compatible with MacOS, Linux and
     [WSL](https://docs.microsoft.com/en-us/windows/wsl/about)):
 
-```bash
+``` {.shell}
 curl -L https://nixos.org/nix/install | sh
 ```
 
 2.  Clone the repository:
 
-```bash
+``` {.shell}
 git clone https://git.coolneng.duckdns.org/coolneng/locigenesis
 ```
 
 3.  Change the working directory to the project:
 
-```bash
+``` {.shell}
 cd locigenesis
 ```
 
 4.  Enter the nix-shell:
 
-```bash
+``` {.shell}
 nix-shell
 ```
 
@@ -52,7 +52,7 @@ contains all the needed dependencies.
 An execution script that accepts 2 parameters is provided, the following
 command invokes it:
 
-```bash
+``` {.shell}
 ./generation.sh <number of sequences> <number of reads>
 ```