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locigenesis
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base: coolneng:35406497a3d92225166c02c07eba7b6f56a8d08a
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coolneng:master
coolneng:0.2.2
coolneng:0.2.1
coolneng:0.2.0
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compare: coolneng:2a997a3e5c2d254ccd44b70d993658897ad1a1ef
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coolneng:master
coolneng:0.2.2
coolneng:0.2.1
coolneng:0.2.0
coolneng:0.1.1
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.gitignore vendored
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@ -1,2 +1,3 @@
*.csv
*.fasta
*.fastq

3
generation.sh
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@ -19,6 +19,5 @@ fastq=".fastq"
filename="sequence"
prefix="curesim_"
Rscript src/repertoire.r "$sequences" &&
java -jar tools/CuReSim.jar -n $((number_of_reads * sequences)) -m "$read_mean_size" -sd "$read_variance_size" -f "$data_directory$filename$fasta" -o "$data_directory$prefix$filename$fastq"
Rscript src/repertoire.r "$sequences" && java -jar tools/CuReSim.jar -n $((number_of_reads * sequences)) -m "$read_mean_size" -sd "$read_variance_size" -f "$data_directory$filename$fasta" -o "$data_directory$prefix$filename$fastq"
rm "$data_directory/log.txt"