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locigenesis
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2 Commits
2a997a3e5c ... 35406497a3

Author SHA1 Message Date
coolneng 35406497a3
Format generation script 2021-04-21 20:11:56 +02:00
coolneng b771071974
Remove csv from gitignore 2021-04-21 20:11:32 +02:00
2 changed files with 2 additions and 2 deletions
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1
.gitignore vendored
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@ -1,3 +1,2 @@
*.csv
*.fasta *.fasta
*.fastq *.fastq

3
generation.sh
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@ -19,5 +19,6 @@ fastq=".fastq"
filename="sequence" filename="sequence"
prefix="curesim_" prefix="curesim_"
Rscript src/repertoire.r "$sequences" && java -jar tools/CuReSim.jar -n $((number_of_reads * sequences)) -m "$read_mean_size" -sd "$read_variance_size" -f "$data_directory$filename$fasta" -o "$data_directory$prefix$filename$fastq" Rscript src/repertoire.r "$sequences" &&
java -jar tools/CuReSim.jar -n $((number_of_reads * sequences)) -m "$read_mean_size" -sd "$read_variance_size" -f "$data_directory$filename$fasta" -o "$data_directory$prefix$filename$fastq"
rm "$data_directory/log.txt" rm "$data_directory/log.txt"