Remove redundant sequencing runs argument

src/repertoire.r

@@ -16,7 +16,7 @@ save_data <- function(data) {
   write.csv(vdj_sequences, "data/vdj_alignment.csv", row.names = FALSE)
 }
 
-process_data <- function(repertoire) {
+process_data <- function(repertoire, sequencing_runs) {
   columns <- c(
     "sequence", "v_sequence_alignment",
     "d_sequence_alignment", "j_sequence_alignment"
@@ -36,4 +36,4 @@ parse_cli_arguments <- function() {
 
 arguments <- parse_cli_arguments(commandArgs(trailing))
 repertoire <- generate_repertoire(number_of_sequences = arguments[1])
-process_data(repertoire)
+process_data(repertoire, sequencing_runs)