20 Commits

Author	SHA1	Message	Date
coolneng	4adb92e901	Export original CDR3 to a file	2021-04-22 11:54:58 +02:00
coolneng	fb5d781c66	Add space to sequence ID for easier parsing	2021-04-21 21:02:56 +02:00
coolneng	5154a35fca	Remove sequencing runs argument from repertoire	2021-04-21 19:59:38 +02:00
coolneng	18ffbf9a75	Add v_call and j_call to sequence ID	2021-04-21 18:51:08 +02:00
coolneng	dd9f7ffde4	Remove redundant HVR sequence construction	2021-04-07 19:49:44 +02:00
coolneng	38b35f7d12	Align full sequences efficiently	2021-04-07 18:31:39 +02:00
coolneng	f81e4af94e	Amplify VDJ sequences to simplify parsing	2021-03-29 22:57:36 +02:00
coolneng	576597cb04	Remove redundant sequencing runs argument	2021-03-29 20:40:01 +02:00
coolneng	66b39485a9	Save vdj alignment sequences to a CSV	2021-03-23 19:35:10 +01:00
coolneng	d5bf8f3b72	Remove redundant casting	2021-03-11 21:28:00 +01:00
coolneng	762791829a	Save v_call and j_call to a text file	2021-03-11 21:03:16 +01:00
coolneng	7b15df7614	Simplify repertoire generation	2021-03-10 12:34:20 +01:00
coolneng	d2e45bc00f	Change output format to FASTA	2021-03-02 20:08:14 +01:00
coolneng	42aadb1e28	Add sequencing runs CLI argument	2021-02-28 02:23:58 +01:00
coolneng	ae5014fd74	Remove a_chain generation	2021-02-28 02:23:28 +01:00
coolneng	53dda36c66	Export the data to FASTQ files	2021-02-26 02:20:11 +01:00
coolneng	b035c496f7	Filter the relevant columns from immuneSIM output	2021-02-26 02:19:40 +01:00
coolneng	2cece5e53e	Set number of sequences via a CLI argument	2021-02-25 20:02:11 +01:00
coolneng	010849d4c9	Generate both alfa and beta chains	2021-02-25 20:00:35 +01:00
coolneng	6cb20a7b1e	Create a repertoire simulation prototype	2021-02-21 20:59:39 +01:00