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52 Commits 1 Branch 5 Tags 213 KiB
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13 Commits

Author SHA1 Message Date
coolneng 0e005735bc
Create a Nix derivation for CuReSim 2021-05-04 00:57:35 +02:00
coolneng 36eb73b458
Add alignment to generation script 2021-05-03 21:51:48 +02:00
coolneng 4dec2061fc
Generate FASTQ files from the simulated repertoire 2021-04-22 13:59:45 +02:00
coolneng 35406497a3
Format generation script 2021-04-21 20:11:56 +02:00
coolneng 2a997a3e5c
Rename sequencing_runs to number_of_reads 2021-04-21 20:09:02 +02:00
coolneng 1020d610d3
Run CuReSim n times for each sequence 2021-04-21 20:00:13 +02:00
coolneng f81e4af94e
Amplify VDJ sequences to simplify parsing 2021-03-29 22:57:36 +02:00
coolneng 576597cb04
Remove redundant sequencing runs argument 2021-03-29 20:40:01 +02:00
coolneng bc666a37c7
Delete CuReSim log file after execution 2021-03-11 21:28:58 +01:00
coolneng f4a001f821
Change CuReSim output file extension to FASTQ 2021-03-10 12:33:25 +01:00
coolneng deb1066982
Set CuReSim read size to 350 bases 2021-03-02 20:07:05 +01:00
coolneng 42aadb1e28
Add sequencing runs CLI argument 2021-02-28 02:23:58 +01:00
coolneng b51706d0c0
Create a script that executes the pipeline 2021-02-26 03:11:25 +01:00