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Set CuReSim read size to 350 bases

This commit is contained in:
coolneng 2021-03-02 20:07:05 +01:00
parent edc4a72425
commit deb1066982
Signed by: coolneng
GPG Key ID: 9893DA236405AF57
1 changed files with 4 additions and 2 deletions
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6
generation.sh
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@ -11,9 +11,11 @@ fi
sequences=$1
sequencing_runs=$2
read_mean_size=350
read_variance_size=0.0
data_directory="data/"
file="sequence.fastq"
file="sequence.fasta"
prefix="curesim_"
Rscript src/repertoire.r "$sequences" "$sequencing_runs"
java -jar tools/CuReSim.jar -f "$data_directory$file" -o "$data_directory$prefix$file"
java -jar tools/CuReSim.jar -m "$read_mean_size" -sd "$read_variance_size" -f "$data_directory$file" -o "$data_directory$prefix$file"