diff --git a/src/repertoire.r b/src/repertoire.r index b7a5d83..fda052a 100644 --- a/src/repertoire.r +++ b/src/repertoire.r @@ -2,13 +2,6 @@ library(immuneSIM) library(Biostrings) generate_repertoires <- function(number_of_sequences) { - a_chain <- immuneSIM( - number_of_seqs = number_of_sequences, - species = "hs", - receptor = "tr", - chain = "a", - verbose = TRUE - ) b_chain <- immuneSIM( number_of_seqs = number_of_sequences, species = "hs", @@ -16,7 +9,7 @@ generate_repertoires <- function(number_of_sequences) { chain = "b", verbose = TRUE ) - return(list("a_chain" = a_chain, "b_chain" = b_chain)) + return(b_chain) } process_chain <- function(repertoire) {