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locigenesis
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Run CuReSim n times for each sequence

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coolneng 2021-04-21 20:00:13 +02:00
parent 5154a35fca
commit 1020d610d3
Signed by: coolneng
GPG Key ID: 9893DA236405AF57
1 changed files with 1 additions and 1 deletions
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generation.sh
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@ -19,5 +19,5 @@ fastq=".fastq"
filename="sequence"
prefix="curesim_"
Rscript src/repertoire.r "$sequences" "$sequencing_runs" && java -jar tools/CuReSim.jar -n "$sequencing_runs" -m "$read_mean_size" -sd "$read_variance_size" -f "$data_directory$filename$fasta" -o "$data_directory$prefix$filename$fastq"
Rscript src/repertoire.r "$sequences" && java -jar tools/CuReSim.jar -n $((sequencing_runs * sequences)) -m "$read_mean_size" -sd "$read_variance_size" -f "$data_directory$filename$fasta" -o "$data_directory$prefix$filename$fastq"
rm "$data_directory/log.txt"