22 lines
376 B
Bash
22 lines
376 B
Bash
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#!/bin/sh
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usage() {
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echo "usage: generation.sh <number of sequences>"
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exit 1
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}
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if [ $# != 1 ]; then
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usage
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fi
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sequences=$1
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data_directory="data/"
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prefix="curesim_"
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Rscript src/repertoire.r "$sequences"
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for file in "$data_directory"*.fastq; do
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file_name=$(echo "$file" | cut -d / -f 2)
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java -jar tools/CuReSim.jar -f "$file" -o "$data_directory$prefix$file_name"
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done
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