2021-02-17 23:33:54 +01:00
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* locigenesis
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locigenesis is a tool that generates an immune repertoire and runs it through a sequence reader simulation tool, to generate sequencing errors.
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2021-05-03 23:27:19 +02:00
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** Installation
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This project uses [[https://nixos.org/][Nix]] to ensure reproducible builds.
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2021-05-04 00:59:05 +02:00
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1. Install Nix (compatible with MacOS, Linux and [[https://docs.microsoft.com/en-us/windows/wsl/about][WSL]]):
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2021-05-03 23:27:19 +02:00
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#+begin_src shell
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curl -L https://nixos.org/nix/install | sh
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#+end_src
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1. Clone the repository:
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#+begin_src shell
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git clone https://git.coolneng.duckdns.org/coolneng/locigenesis
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#+end_src
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3. Change the working directory to the project:
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#+begin_src shell
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cd locigenesis
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#+end_src
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4. Enter the nix-shell:
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#+begin_src shell
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nix-shell
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#+end_src
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After running these commands, you will find yourself in a shell that contains all the needed dependencies.
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** Usage
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