Add org-ref integation to biblio module

modules/tools/biblio/config.el

@@ -0,0 +1,116 @@
+;;; tools/biblio/config.el -*- lexical-binding: t; -*-
+
+;; Internal function to set the various paths used in the
+;; reference packages.
+(defun +biblio-set-paths-fn (&optional symbol value)
+  (when symbol
+    (set-default symbol value))
+  (when value
+    (cond ((eq symbol '+biblio-pdf-library-dir)
+           (when (featurep! :lang org)
+             (setq org-ref-pdf-directory value))
+           (setq bibtex-completion-library-path value))
+          ((eq symbol '+biblio-default-bibliography-files)
+           (when (featurep! :lang org)
+             (setq reftex-default-bibliography value
+                   org-ref-default-bibliography value))
+           (setq bibtex-completion-bibliography value))
+          ((eq symbol '+biblio-notes-path)
+           (when (featurep! :lang org)
+             (if (directory-name-p value)
+                 (setq org-ref-notes-directory value)
+               (setq org-ref-bibliography-notes value)))
+           (setq bibtex-completion-notes-path value)))))
+
+
+(defcustom +biblio-pdf-library-dir nil
+  "Directory where pdf files are stored. Must end with a slash."
+  :type 'string
+  :set #'+biblio-set-paths-fn)
+
+(defcustom +biblio-default-bibliography-files nil
+  "A list of default bibtex files to use."
+  :type '(repeat :tag "List of bibtex files" file)
+  :set #'+biblio-set-paths-fn)
+
+(defcustom +biblio-notes-path nil
+  "The place where you will store your notes for bibliography files.
+
+This can be either a single file or directory of files.
+In case of directory the path must end with a slash."
+  :type 'string
+  :set #'+biblio-set-paths-fn)
+
+
+(use-package! bibtex-completion
+  :defer t
+  :preface
+  ;; Allow the user to set a template of their own via (setq). if the user does
+  ;; not set one fall back to the +biblio variants which have a reasonable
+  ;; fallback.
+  (defvar bibtex-completion-notes-template-multiple-files nil)
+   :config
+
+  (when (featurep! :completion ivy)
+    (add-to-list 'ivy-re-builders-alist '(ivy-bibtex . ivy--regex-plus)))
+
+  (setq bibtex-completion-additional-search-fields '(keywords)
+        ;; This tell bibtex-completion to look at the File field of the bibtex
+        ;; to figure out which pdf to open
+        bibtex-completion-pdf-field "file")
+  (unless bibtex-completion-notes-template-multiple-files
+    (setq bibtex-completion-notes-template-multiple-files
+          "${title} : (${=key=})
+
+- tags ::
+- keywords :: ${keywords}
+
+\n* ${title}\n  :PROPERTIES:\n  :Custom_ID: ${=key=}\n  :URL: ${url}\n  :AUTHOR: ${author-or-editor}\n  :NOTER_DOCUMENT: /${file}\n  :NOTER_PAGE: \n  :END:\n\n")))
+
+
+;; TODO which set of keys that should be bound for commonly used functions
+;; see https://github.com/jkitchin/org-ref/blob/master/org-ref-core.el#L3998
+(use-package! org-ref
+  :when (featurep! :lang org +ref)
+  :after org
+  :preface
+  ;; This need to be set before the package is loaded, because org-ref will
+  ;; automatically `require' an associated package during its loading.
+  (setq org-ref-completion-library (cond ((featurep! :completion ivy)  #'org-ref-ivy-cite)
+                                         ((featurep! :completion helm) #'org-ref-helm-bibtex)
+                                         (t                            #'org-ref-reftex)))
+  :config
+  ;; Although the name is helm-bibtex, it is actually a bibtex-completion function
+  ;; it is the legacy naming of the project helm-bibtex that causes confusion.
+  (setq org-ref-open-pdf-function 'org-ref-get-pdf-filename-helm-bibtex)
+  ;; orb will define handlers for note taking so not needed to use the
+  ;; ones set for bibtex-completion
+  (unless (featurep! :lang org +roam)
+    ;; Allow org-ref to use the same template mechanism as {helm,ivy}-bibtex for
+    ;; multiple files if the user has chosen to spread their notes.
+    (setq org-ref-notes-function (if (and org-ref-notes-directory (directory-name-p org-ref-notes-directory))
+                                     #'org-ref-notes-function-many-files
+                                   #'org-ref-notes-function-one-file))))
+
+(use-package! org-roam-bibtex
+  :when (featurep! :lang org +roam)
+  :preface
+  ;; if the user has not set a template mechanism set a reasonable one of them
+  ;; The package already tests for nil itself so we define a dummy tester
+  (defvar orb-preformat-keywords
+    '("=key=" "title" "url" "file" "author-or-editor" "keywords"))
+  (defvar orb-templates nil)
+  :hook (org-roam-mode . org-roam-bibtex-mode)
+  :config
+  (unless orb-templates
+    (setq orb-templates
+          '(("r" "ref" plain (function org-roam-capture--get-point)
+             ""
+             :file-name "${slug}"
+             :head "#+TITLE: ${=key=}: ${title}\n#+roam_key: ${ref}\n#+roam_tags: lit
+
+- tags ::
+- keywords :: ${keywords}
+
+\n* ${title}\n  :PROPERTIES:\n  :Custom_ID: ${=key=}\n  :URL: ${url}\n  :AUTHOR: ${author-or-editor}\n  :NOTER_DOCUMENT: %(orb-process-file-field \"${=key=}\")\n  :NOTER_PAGE: \n  :END:\n\n"
+             :unnarrowed t)))))

modules/tools/biblio/packages.el

@@ -0,0 +1,12 @@
+;; -*- no-byte-compile: t; -*-
+;;; tools/biblio/packages.el
+
+(package! bibtex-completion :pin "9f6ea920a49457d85096caa0e61f086a42b2908e")
+(when (featurep! :completion ivy)
+  (package! ivy-bibtex :pin "9f6ea920a49457d85096caa0e61f086a42b2908e"))
+(when (featurep! :completion helm)
+  (package! helm-bibtex :pin "9f6ea920a49457d85096caa0e61f086a42b2908e"))
+(when (featurep! :lang org +ref)
+  (package! org-ref :pin "8aa2bb45268f660956151547533689d4ec30378d"))
+(when (featurep! :lang org +roam)
+  (package! org-roam-bibtex :pin "f7b5be2ce0b43dd4d842484fc0ec37fdc8526907"))