Remove parenthesis from the FASTQ ID
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52eaee4568
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@ -1,6 +1,7 @@
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from argparse import ArgumentParser
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from glob import glob
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from typing import List, Tuple
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from re import sub
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from pandas import DataFrame, read_html, Series
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@ -35,7 +36,9 @@ def preprocess_dataframe(adapters) -> Series:
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def save_to_file(filename, adapters) -> None:
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with open(filename, "w") as f:
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for index, value in adapters.iteritems():
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fasta_entry = f">{index}\n{value}\n"
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sequence_str = "".join(map(str, index))
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sequence_id = sub(r"[()]", "", sequence_str)
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fasta_entry = f">{sequence_id}\n{value}\n"
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f.write(fasta_entry)
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