Remove parenthesis from the FASTQ ID

This commit is contained in:
coolneng 2021-12-01 18:52:51 +01:00
parent 52eaee4568
commit e826d6f92b
Signed by: coolneng
GPG Key ID: 9893DA236405AF57
1 changed files with 4 additions and 1 deletions

View File

@ -1,6 +1,7 @@
from argparse import ArgumentParser
from glob import glob
from typing import List, Tuple
from re import sub
from pandas import DataFrame, read_html, Series
@ -35,7 +36,9 @@ def preprocess_dataframe(adapters) -> Series:
def save_to_file(filename, adapters) -> None:
with open(filename, "w") as f:
for index, value in adapters.iteritems():
fasta_entry = f">{index}\n{value}\n"
sequence_str = "".join(map(str, index))
sequence_id = sub(r"[()]", "", sequence_str)
fasta_entry = f">{sequence_id}\n{value}\n"
f.write(fasta_entry)