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adapter-parser
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Discard reports without overrepresented sequences

This commit is contained in:
coolneng 2021-12-01 15:50:33 +01:00
parent e59683b925
commit 52eaee4568
Signed by: coolneng
GPG Key ID: 9893DA236405AF57
1 changed files with 3 additions and 2 deletions
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parser.py
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@ -14,6 +14,7 @@ def extract_adapters(files) -> Tuple[Series, List]:
all_adapters = DataFrame() all_adapters = DataFrame()
for entry in files: for entry in files:
tables = read_html(entry) tables = read_html(entry)
if len(tables) > 1:
adapter_sequences = tables[1].Sequence adapter_sequences = tables[1].Sequence
all_adapters = all_adapters.append(adapter_sequences) all_adapters = all_adapters.append(adapter_sequences)
processed_adapters = preprocess_dataframe(all_adapters) processed_adapters = preprocess_dataframe(all_adapters)